Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015889388.1_cds_XP_016444074.1_39175
CDS Infomation

[gene=LOC107769379] [db_xref=GeneID:107769379] [protein=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase-like isoform X1] [protein_id=XP_016444074.1] [location=join(27063..27911,28862..28965,29990..30599)] [gbkey=CDS]
Sequence

ATGAGTTCTCTGACCATTTTACTTCATCCTTCTCCATTCTTATTTACCAATCCATCAAAC
TCAAAAACCACCATTTTCACTTTACACAACAGACCAAGAATCTTGATTCCTCAAGCTTCA
TTTTCGACTTCACCAAATTCTCCTCTTTGGACGATTTCAGAGATAGTCAAGGCTGTTAAT
GGCAGAATCATTAGGTGGGGTCCACCTGGAACAATCTGTACGGACACCAGAACACTTGAA
CCAGGACAATGGTTCCTCCCACTTGTTGGCCAAAACTTTGATGCCCACAATTTCATTACC
CCTGAATTAGCCACTAAAGGCTGTGTTGGAGTGATTGGGAACTGGGTTTGTGAGGACTGG
AACAATGGGTTTGTAAAAGTGGAGGATGATACTGTAAGTTCTTTAAAAAGTTTGGGTTTT
TATGCAAGAAACAGGTTTACTGGTTGTTTAATTGGGTTAACAGGAAGTGTGGGAAAGACC
ACTACAAAGACTATGATAGCATTGGCTCTGAAGAGTGTTGGAAATGTTTATTACAGCCCA
GGGAACTGGAACAATGAGATTGGGGTCGCGTTATCGCTTATTGGGATGCCGAGGGATGTG
GGGTTTGGCGTTTTGGAGATGGGGATGAGCAAGAAAGGTGAGATCTTGGAACTGTCTAGG
ATGTGTAGGCCAAATGTAAGGGTGATTCTGAATGTGAGTGCTGCACATTTAGAGAATTTC
GCCAACTTGGAGGAGGTTTCCATGGCGAAAGGGGAGATTTTAAGAGAAGCAATGCCGGGG
GATGTGTGTGTATTGAATGGTGATGATCCTCTTGTCATGAGCCTCCCAGTTTCGGCTGGA
GTTAAGAAGGTGGTATTTGGTCGAAAGTTAGGTTGTGATGTTCGTTTAGTTTCTTCAGAA
ATCAAACATGGAGGTCGCAGTATACAAGTTGTTTTAGAGGCGTTCAACGAGATGGTTAAA
TTCGTAATCTCCTGTCCTGGCCTGCATCTGGCCATAAATGCATGTGCAGCTGCTGCTGTG
GCTACTGCACTTGGTGTTCCTCTTGCTCTAGCAGGAAAATCCTTATCCAGATTTACACCT
GTTCACAGGAGATCAGAACTTGAAGTAGCTGAAAATGGGATTACAATAATAAATGATGTT
TACAATGCAAGTCCAGCTAGTACTCAAGCTGCCATTGACTTGTTAAGAAACATGGACTGC
AAAGGTAAACGAGTTGCTATACTTGGAGACATGCTTGAACTTGGTCCAATGGAAATCAAC
TTCCATGAGTTGATGCTACAGAGTTGCTGTGATGCGCACTTTGATGTAATTGCACTTGTT
GGAACAAGGTTTATACGTGCAGCTGAGAGTATTGACTGTGCTCGGGAGATAAAAGTGGTA
TGCACCACTGATGCTCGCCAGATGGCTCCTAAAATTATCAATTTTTTAAATAGTGGTGAT
GTCATCCTTGTCAAAGGCAGTTGTCACATAGGAATGGAAGTGATTGTAGATGCACTCAAG
TCTATCCACTTTGGTGTCCCACGTGGGCCGGCTGAAGATGCTTTCTTCAGTTTAGTGTTG
TGA

Peptide Sequence

PEP ID

XP_016444074.1
PEP Infomation

PREDICTED: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase-like isoform X1 [Nicotiana tabacum]
Sequence

MSSLTILLHPSPFLFTNPSNSKTTIFTLHNRPRILIPQASFSTSPNSPLWTISEIVKAVN
GRIIRWGPPGTICTDTRTLEPGQWFLPLVGQNFDAHNFITPELATKGCVGVIGNWVCEDW
NNGFVKVEDDTVSSLKSLGFYARNRFTGCLIGLTGSVGKTTTKTMIALALKSVGNVYYSP
GNWNNEIGVALSLIGMPRDVGFGVLEMGMSKKGEILELSRMCRPNVRVILNVSAAHLENF
ANLEEVSMAKGEILREAMPGDVCVLNGDDPLVMSLPVSAGVKKVVFGRKLGCDVRLVSSE
IKHGGRSIQVVLEAFNEMVKFVISCPGLHLAINACAAAAVATALGVPLALAGKSLSRFTP
VHRRSELEVAENGITIINDVYNASPASTQAAIDLLRNMDCKGKRVAILGDMLELGPMEIN
FHELMLQSCCDAHFDVIALVGTRFIRAAESIDCAREIKVVCTTDARQMAPKIINFLNSGD
VILVKGSCHIGMEVIVDALKSIHFGVPRGPAEDAFFSLVL

Transcript Sequence

Gene sequence data has not been registered.